Time to celebrate again! I have got my second paper out! This time is a first author one and will be presented in Vilamoura, Portugal, next month at the International Conference on Bioinformatics Models, Methods and Algorithms - BIOINFORMATICS 2012. The title of the paper is “PYCOEVOL: A Python workflow…
There are several software packages and modules developed in Python. If some provided extended facilities and full-featured Graphical User Interfaces, others work on the language environment extending python native methods and attributes. Below you find a small list of such packages. Biopython - A set of freely available tools for…
A highly comprehensive collection of protein interactions databases, predictors as well as web tools can be found here! Notably, PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PISA structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected. A…
A tiny collection of useful python modules for Constraint Programming, Artificial Intelligence and Data Mining, as well as Web Frameworks: Constraint Programming: CPSP Tools - Constraint-based Protein Structure Prediction. The CPSP-tools package provides programs to solve exactly and completely the problems typical of studies using 3D lattice protein models. Among…
Big times for me! My first ever paper is out! It will be presented in Italy next month at the Workshop on Constraint Based Methods for Bioinformatics - WCB’11, which is a workshop satellite to the International Conference on Principles and Practice of Constraint Programming - CP 2011. Have a…