Publications

Journal   Fábio Madeira, Michele Tinti, Gavuthami Murugesan, Emily Berrett, Margaret Stafford, Rachel Toth, Christian Cole, Carol MacKintosh and Geoffrey J. Barton. 2015. 14-3-3-Pred: Improved methods to predict 14-3-3-binding phosphopeptides. Bioinformatics (Oxford). 2015 Mar 3; 2015:btv133.

Journal   Michele Tinti, Fábio Madeira, Gavuthami Murugesan, Gerta Hoxhaj, Rachel Toth and Carol MacKintosh. 2014. ANIA - ANnotation and Integrated Analysis of the 14-3-3-interactome. Database (Oxford). 2014 Feb 5; 2014:bat085.

Preprint   Ludwig Krippahl and Fábio Madeira. 2014. Improving Protein Docking with Constraining Programming and Coevolution Data. bioRxiv 10.1101/002329.

Conference Proceedings   Ludwig Krippahl, Fábio Madeira and Pedro Barahona. 2013. Constraining Protein Docking with Coevolution Data for Medical Research. Proceedings of the 14th Conference on Artificial Intelligence in Medicine, pp 110-114.

Conference Proceedings   Fábio Madeira and Ludwig Krippahl. 2012. PYCOEVOL - A Python Workflow to Study Protein-protein Coevolution. Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, pp 143-149.

Conference Proceedings   Marco Correia, Fábio Madeira, Pedro Barahona and Ludwig Krippahl. 2011. Improving Multiple Sequence Alignments with Constraint Programming and Local Search. Prooceedings of the Workshop on Constraint Based Methods for Bioinformatics, pp 37-44.

Thesis   Fábio Madeira. 2010. Estudos estruturais e funcionais da fenilalanina hidroxilase humana. Master Thesis in Molecular Genetics and Biomedicine. In Portuguese

Posters

Online  Fábio Madeira and Geoffrey J. Barton. 2015. Analysis of protein domain interactions and genetic variation. SLS PhD Poster Session at University of Dundee, Dundee, October 9th.
Selected as Poster Prize Winner.

Online  Fábio Madeira and Geoffrey J. Barton. 2015. Protein interactions and genetic variation. ISMB/ECCB 2015 (23rd Annual International Conference on Intelligent Systems for Molecular Biology - 14th European Conference on Computational Biology), Dublin, Jul 10-14th.
Selected for Oral Poster Presentation and Travel Fellowship.

Online  Fábio Madeira, Michele Tinti, Gerta Hoxhaj, Geoffrey J. Barton and Carol MacKintosh. 2013. Predicting and mapping the human 14-3-3 interactome to test a new signalling paradigm. "Wellcome Trust Retreat in Firbush", College of Life Sciences, University of Dundee, May 23th.

Online  Michele Tinti, Fábio Madeira, Catherine Johnson, Margaret Malcolm and Carol MacKintosh. 2012. Evolution of 14-3-3-binding sites and 2R-Ohnologue families. PTMs in Cell Signaling, Copenhagen, Denmark, December 2-5th.

Offline  Paulo Roque Lino, Fábio Madeira, Isabel Tavares de Almeida and Paula Leandro. 2010. Alternative Answers to Everlasting Problems: Protein Engineering Towards New Approaches for Phenylketonuria Treatment. 2010 SPDM Annual Symposium, Albufeira, Portugal, November 4-5th.

Online  Catarina Coelho, Fábio Madeira, Paulo Roque Lino, Isabel Tavares de Almeida, Paula Leandro and Maria João Romão. 2010. Crystallization of a Stable Form of Human Phenylalanine Hydroxylase: Towards the 3D Structure Determination. UK- Portuguese Teams Meeting. Protein-protein interaction and Protein folding. FCT-UNL, March 29-31st.

Talks

Online   Deciphering the substrate specificity of ubiquitin conjugating enzymes. 3rd rotation project on the Wellcome Trust PhD programme, College of Life Sciences, University of Dundee, 2013. http://dx.doi.org/10.6084/m9.figshare.923440.

Online   Development of classification methods to predict new 14-3-3-binding proteins and phosphopeptides. 2nd rotation project on the Wellcome Trust PhD programme, College of Life Sciences, University of Dundee, 2013. http://dx.doi.org/10.6084/m9.figshare.923441.

Online   Mapping the 14-3-3-binding 2R-ohnologue protein families of the human kinome. 1st rotation project on the Wellcome Trust PhD programme, College of Life Sciences, University of Dundee, 2013. http://dx.doi.org/10.6084/m9.figshare.923451.

Online   PYCOEVOL: A Python workflow to study protein-protein coevolution. "International conference on Bioinformatics Models, Methods and Algorithms - BIOINFORMATICS 2012", Vilamoura, Algarve, Portugal, February 1-4th, 2012. http://dx.doi.org/10.6084/m9.figshare.923435.

Online   Improving Multiple Sequence Alignments with Constraint Programming and Local Search. "Workshop on Constraint Based Methods for Bioinformatics - WCB11", Perugia, Italy, September 12th, 2011. http://dx.doi.org/10.6084/m9.figshare.923434.

Online   Phenylalanine Hydroxilase: Towards 3D Structure Determination. "Met&Gen Ph.D. Students Workshop. Inborn Errors of Metabolism: Understanding the Molecular Mechanisms", Faculdade de Farmácia, Universidade de Lisboa, November 27th, 2010. http://dx.doi.org/10.6084/m9.figshare.923433.